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Recognise PENDING status in sequence imports.

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If a final sequence file or directory name matches a pattern
which is recognised to indicate a ‘pending acceptance’ status,
the final data (if any exists) for that sequence will be deleted
and a comment added to the effect that the sequence has been
marked as ‘pending’.

To accept the sequence, rename its final file or directory name
accordingly.

Note: it is the *final* data that is searched for a matching
pattern, not the raw.

Closes #91.
This commit is contained in:
D. Berge
2021-05-21 15:15:15 +02:00
parent 779b28a331
commit 67af85eca9
3 changed files with 70 additions and 0 deletions
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18
bin/datastore.py
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@@ -639,3 +639,21 @@ class Datastore:
self.maybe_commit()
# We do not commit if we've been passed a cursor, instead
# we assume that we are in the middle of a transaction
def del_sequence_final(self, sequence, cursor = None):
"""
Remove final data for a sequence.
"""
if cursor is None:
cur = self.conn.cursor()
else:
cur = cursor
qry = "DELETE FROM files WHERE hash = (SELECT hash FROM final_lines_files WHERE sequence = %s);"
cur.execute(qry, (sequence,))
if cursor is None:
self.maybe_commit()
# We do not commit if we've been passed a cursor, instead
# we assume that we are in the middle of a transaction