If there is a problem with files matching the capture
globs but not matching the file name regexp patterns,
these routines will emit a message to stderr and skip
the non-matching file.
Every time an API call is made via the store's own `api`
interface, a request counter is incremented. It is
decremented whenever a call completes, whether sucessfully
or not.
If the request counter is at zero, no requests are in
progress. This is exposed to the user via the `loading`
getter.
Calls made other than via the store's `api` interface
will not be registered. The user can choose to increment /
decrement the request counter manually via the relevant
store methods.
Pass a trueish value in opts.files to get the list of
raw and final files associated with a sequence. It does
make the query about 30% slower as it stands.
It will not delete any labels that have been removed
from the configuration, as those may be used, but it
will add new labels and modify existing ones if they
changed.
An alert is sent whenever an endpoint returns
an error other than an explicit failure (e.g.,
it won't send an alert if a middleware intentionally
returns a {status: XXX} object).
The configuration file etc/config.yaml is exposed to the
server backend under require('configuration').global.
Note that at some point it will probably make sense to
merge the two config files.
This script runs the deferred imports. It is meant to
be called from a cronjob at regular intervals – every
one or two minutes is probably a good setting.
It checks if another instance is already running before
doing its thing.
If anything goes wrong (any of the called processes exits
with non-zero condition) it will send an alert to GitLab,
provided that the authorisation key is known.
In case of errors (or anything else of note), send_alert.py
can be used to push information to a GitLab alerts endpoint.
It is generic enough that it can be used with anything else, though.
If their respective configuration keys are not
defined in a survey configuration, the import
routines will print an informational message
and exit successfully.
