It exports the data that is entered directly into
Dougal as opposed to being read from an external
source.
As of this commit, not all direct data is exported.
Specifically, sequence comments (raw and final),
sequence and shot NTBA and shot NTBP statuses are not
exported.
If there is a problem with files matching the capture
globs but not matching the file name regexp patterns,
these routines will emit a message to stderr and skip
the non-matching file.
It will not delete any labels that have been removed
from the configuration, as those may be used, but it
will add new labels and modify existing ones if they
changed.
This script runs the deferred imports. It is meant to
be called from a cronjob at regular intervals – every
one or two minutes is probably a good setting.
It checks if another instance is already running before
doing its thing.
If anything goes wrong (any of the called processes exits
with non-zero condition) it will send an alert to GitLab,
provided that the authorisation key is known.
In case of errors (or anything else of note), send_alert.py
can be used to push information to a GitLab alerts endpoint.
It is generic enough that it can be used with anything else, though.
If their respective configuration keys are not
defined in a survey configuration, the import
routines will print an informational message
and exit successfully.
This is a super-simple library that does the minimum required
to get things going for the specific operations where this
code is foreseen to be used in the immediate future. It is not
and it does not aim to be a complete, generic or universal P1/11
parsing solution.
