#!/usr/bin/python3 """ Import raw p111. For each survey in configuration.surveys(), check for new or modified final P1/11 files and (re-)import them into the database. """ import os import sys import pathlib import re import time import configuration import p111 from datastore import Datastore if __name__ == '__main__': print("Reading configuration") surveys = configuration.surveys() file_min_age = configuration.read().get('imports', {}).get('file_min_age', 10) print("Connecting to database") db = Datastore() db.connect() print("Reading surveys") for survey in surveys: print(f'Survey: {survey["id"]} ({survey["schema"]})') db.set_survey(survey["schema"]) try: raw_p111 = survey["raw"]["p111"] except KeyError: print("No raw P1/11 configuration") exit(0) pattern = raw_p111["pattern"] rx = re.compile(pattern["regex"]) if "ntbp" in survey["raw"]: ntbpRx = re.compile(survey["raw"]["ntbp"]["pattern"]["regex"]) for fileprefix in raw_p111["paths"]: print(f"Path prefix: {fileprefix}") for globspec in raw_p111["globs"]: for filepath in pathlib.Path(fileprefix).glob(globspec): filepath = str(filepath) print(f"Found {filepath}") if ntbpRx: ntbp = ntbpRx.search(filepath) is not None else: ntbp = False if not db.file_in_db(filepath): age = time.time() - os.path.getmtime(filepath) if age < file_min_age: print("Skipping file because too new", filepath) continue print("Importing") match = rx.match(os.path.basename(filepath)) if not match: error_message = f"File path not match the expected format! ({filepath} ~ {pattern['regex']})" print(error_message, file=sys.stderr) print("This file will be ignored!") continue file_info = dict(zip(pattern["captures"], match.groups())) p111_data = p111.from_file(filepath) print("Saving") p111_records = p111.p111_type("S", p111_data) db.save_raw_p111(p111_records, file_info, filepath, survey["epsg"], ntbp=ntbp) else: print("Already in DB") # Update the NTBP status to whatever the latest is, # as it might have changed. db.set_ntbp(filepath, ntbp) if ntbp: print("Sequence is NTBP") print("Done")