mirror of
https://gitlab.com/wgp/dougal/software.git
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4c103fafca
It exports the data that is entered directly into Dougal as opposed to being read from an external source. As of this commit, not all direct data is exported. Specifically, sequence comments (raw and final), sequence and shot NTBA and shot NTBP statuses are not exported.
51 lines
1.0 KiB
Python
Executable File
51 lines
1.0 KiB
Python
Executable File
#!/usr/bin/python3
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"""
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Export data that is entered directly into Dougal
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as opposed to being read from external sources.
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This data will be read back in when the database
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is recreated for an existing survey.
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"""
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import os
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from glob import glob
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import configuration
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import preplots
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from datastore import Datastore
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exportables = [
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"events_seq",
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"events_seq_labels",
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"events_timed",
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"events_timed_labels"
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]
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if __name__ == '__main__':
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print("Reading configuration")
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surveys = configuration.surveys()
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print("Connecting to database")
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db = Datastore()
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print("Reading surveys")
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for survey in surveys:
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print(f'Survey: {survey["id"]} ({survey["schema"]})')
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db.set_survey(survey["schema"])
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with db.conn.cursor() as cursor:
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try:
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pathPrefix = survey["exports"]["path"]
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except ValueError:
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print("Survey does not define an export path")
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continue
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for table in exportables:
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path = os.path.join(pathPrefix, table)
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print(" → ", path, " ← ", table)
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with open(path, "wb") as fd:
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cursor.copy_to(fd, table);
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print("Done")
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