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0cd1b30e2931b2461038088d6a97a000d750bdc8
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Author SHA1 Message Date
D. Berge
0cd1b30e29 Let create_survey take an explicity schema name 2020-09-02 18:57:42 +02:00
D. Berge
19c0562888 Ensure we don't try to connect to a non-existing database 2020-09-02 16:52:33 +02:00
D. Berge
ffd021a23e Ensure we're not using the database we're about to drop 2020-09-02 16:39:49 +02:00
D. Berge
faf1a0d83f Add database upgrade scripts (WIP) 2020-09-02 15:05:43 +02:00
D. Berge
f708410e47 Conditionally enable / disable system import / export 2020-09-02 15:05:43 +02:00
D. Berge
a8830c9a05 Add system data import module 2020-09-02 15:05:43 +02:00
D. Berge
78aaacb8b3 Improve sequence list search 2020-09-02 11:09:04 +02:00
D. Berge
cf477c921e Add data export task to bin/runner.sh 2020-09-02 09:08:10 +02:00
D. Berge
4c103fafca Add system data export module. 
It exports the data that is entered directly into
Dougal as opposed to being read from an external
source.

As of this commit, not all direct data is exported.
Specifically, sequence comments (raw and final),
sequence and shot NTBA and shot NTBP statuses are not
exported.
 2020-09-02 09:07:06 +02:00
D. Berge
d683f00594 Implement SmartSource header parser 2020-09-02 08:59:22 +02:00
D. Berge
3864dd43f5 Force CRS for header outputs 2020-09-02 08:58:23 +02:00
D. Berge
0a2f0b0b60 Refactor save() so that we can force a specific CRS. 
This was brought about due to the absence of CRS information
in the navigation header outputs. We get either unqualified
easting / northing or unqualified latitude / longitude, neither
of which happen to be WGS84.

This is not a good solution as it involves manual configuration,
but allows us to move forward for the time being.
 2020-09-02 08:55:08 +02:00
D. Berge
ff2e30511c Refactor save() call to pass in header.meta options 2020-09-02 08:54:16 +02:00
D. Berge
1f60ebae47 Make selection of headers to parse configurable 2020-09-02 08:52:49 +02:00
D. Berge
e9f62a420a Only fetch real-time positions when layers are visible 2020-09-01 12:37:59 +02:00
D. Berge
7dbfb3ab6a Change real-time position marker 2020-09-01 12:37:39 +02:00
D. Berge
bf896f71dc Show also NTBP and in progress sequence statuses 2020-09-01 12:36:00 +02:00
D. Berge
297829f343 Do not list raw/final files if there aren't any 2020-09-01 12:35:30 +02:00
D. Berge
4291b83817 Show raw and final remarks in expanded row 2020-09-01 12:34:58 +02:00
D. Berge
276af8fcd6 Filter sequence list locally (fetch all sequences). 
Even in the event that we have thousands of sequences
this should be acceptable and gives us more flexibility
at lower effort than paginating on the server.
 2020-09-01 12:33:01 +02:00
D. Berge
c8e0dc5d02 Return only real files from sequence list endpoint. 
In other words, filter out real-time data.
 2020-09-01 12:30:49 +02:00
D. Berge
1a9f04aa98 Add NTBP status information to sequences summary 2020-09-01 12:17:21 +02:00
D. Berge
880891cc2b Add real-time position to map 2020-09-01 11:01:13 +02:00
D. Berge
ef8429cbb0 Update example survey configuration file 2020-09-01 11:00:17 +02:00
D. Berge
1fc069a0bd Fix path to NTBP regexp pattern 2020-09-01 10:59:29 +02:00
D. Berge
eded667d79 Add endpoint for retrieving real-time data as GeoJSON 2020-09-01 10:58:37 +02:00
D. Berge
557d87de72 Add endpoint to retrieve real-time input data 2020-09-01 10:56:25 +02:00
D. Berge
bfc4124b33 Save to real_time_inputs also when we're on a line 2020-09-01 10:52:38 +02:00
D. Berge
41925c3645 Add a navigation header to the default configuration. 
This receives data from the navigation system on
UDP port 30000. It will try to parse all known headers.
 2020-08-31 14:36:56 +02:00
D. Berge
bed9cdc69f Add UDP server for navigation system headers 2020-08-31 14:36:56 +02:00
D. Berge
c0c395d9a0 Save online and offline real-time data to database 2020-08-31 14:36:56 +02:00
D. Berge
2cf9c36b2d Add real-time inputs table to DB 2020-08-31 14:36:56 +02:00
D. Berge
e4803da149 Add decoders for Hydronav, LABOv3 navigation headers 2020-08-31 13:40:56 +02:00
D. Berge
c4c09f0a9d Delete online data before importing sequence. 
The deferred import routing will delete any online
data for any raw sequences that it imports.
 2020-08-31 13:09:57 +02:00
D. Berge
433daca9ef Add deep properties getter utility function to config. 
cfg._("a.deep.property") returns the value of
cfg.a.deep.property if it exists. If the property
or any of its parents do not exist, returns undefined.
 2020-08-31 13:07:27 +02:00
D. Berge
5363ce8bab Handle NTBP flags in raw data. 
This works by matching a regular expression against
the full path name (not just the file name). If it
matches, the NTBP flag is set to true.
 2020-08-31 13:04:46 +02:00
D. Berge
c32c408d12 Import .profile into runner.sh. 
So that it has access to the right environment
when run by cron.
 2020-08-31 12:57:55 +02:00
D. Berge
54a717dc91 Do not fail hard if preplots do not exist. 
They might not have been done yet, and it will be obvious
to the user if they're not there.
 2020-08-29 13:14:20 +02:00
D. Berge
a9247c691c Handle division by zero 2020-08-29 12:52:29 +02:00
D. Berge
71e0326141 Add missing import 2020-08-29 10:40:55 +02:00
D. Berge
d863f4221d Remove extra space from output 2020-08-29 10:36:04 +02:00
D. Berge
a5fe545885 Update URL with map view parameters. 
The hash part encodes the current view so that it
is recreated when sending a link to someone.
 2020-08-29 10:30:30 +02:00
D. Berge
91d4059cdf Make send_alert usable as a module 2020-08-28 17:33:32 +02:00
D. Berge
22f806e81e Warn on import problems. 
If there is a problem with files matching the capture
globs but not matching the file name regexp patterns,
these routines will emit a message to stderr and skip
the non-matching file.
 2020-08-28 17:31:25 +02:00
D. Berge
639ac237e3 Replace Python globbing library. 
This was motivated by the need to recurse down paths.
 2020-08-28 13:49:43 +02:00
D. Berge
fb4d25643e Implement project summary view 2020-08-28 13:49:14 +02:00
D. Berge
162a8878a9 Add help link to footer 2020-08-28 13:48:03 +02:00
D. Berge
e5bc5a0757 Refactor project summaries to use database views 2020-08-26 20:20:53 +02:00
D. Berge
1bf0b67409 Fix Project component name 2020-08-26 20:20:53 +02:00
D. Berge
242d35ec80 Update schema: add project summary tables 2020-08-26 20:14:07 +02:00